Comparative run-time performance of evolutionary algorithms on multi-objective interpolated continuous optimisation problems.

We propose a new class of multi-objective benchmark problems on which we analyse the performance of four well established multi-objective evolutionary algorithms (MOEAs) – each implementing a different search paradigm – by comparing run-time convergence behaviour over a set of 1200 problem instances. The new benchmarks are created by fusing previously proposed single-objective interpolated continuous optimisation problems (ICOPs) via a common set of Pareto non-dominated seeds. They thus inherit the ICOP property of having tunable fitness landscape features. The benchmarks are of intrinsic interest as they derive from interpolation methods and so can approximate general problem instances. This property is revealed to be of particular importance as our extensive set of numerical experiments indicates that choices pertaining to (i) the weighting of the inverse distance interpolation function and (ii) the problem dimension can be used to construct problems that are challenging to all tested multi-objective search paradigms. This in turn means that the new multi-objective ICOPs problems (MO-ICOPs) can be used to construct well-balanced benchmark sets that discriminate well between the run-time convergence behaviour of different solvers

3D Protein structure prediction with genetic tabu search algorithm

Abstract Background Protein structure prediction (PSP) has important applications in different fields, such as drug design, disease prediction, and so on. In protein structure prediction, there are two important issues. The first one is the design of the structure model and the second one is the design of the optimization technology. Because of the complexity of the realistic protein structure, the structure model adopted in this paper is a simplified model, which is called off-lattice AB model. After the structure model is assumed, optimization technology is needed for searching the best conformation of a protein sequence based on the assumed structure model. However, PSP is an NP-hard problem even if the simplest model is assumed. Thus, many algorithms have been developed to solve the global optimization problem. In this paper, a hybrid algorithm, which combines genetic algorithm (GA) and tabu search (TS) algorithm, is developed to complete this task. Results In order to develop an efficient optimization algorithm, several improved strategies are developed for the proposed genetic tabu search algorithm. The combined use of these strategies can improve the efficiency of the algorithm. In these strategies, tabu search introduced into the crossover and mutation operators can improve the local search capability, the adoption of variable population size strategy can maintain the diversity of the population, and the ranking selection strategy can improve the possibility of an individual with low energy value entering into next generation. Experiments are performed with Fibonacci sequences and real protein sequences. Experimental results show that the lowest energy obtained by the proposed GATS algorithm is lower than that obtained by previous methods. Conclusions The hybrid algorithm has the advantages from both genetic algorithm and tabu search algorithm. It makes use of the advantage of multiple search points in genetic algorithm, and can overcome poor hill-climbing capability in the conventional genetic algorithm by using the flexible memory functions of TS. Compared with some previous algorithms, GATS algorithm has better performance in global optimization and can predict 3D protein structure more effectively

An Empirical Study of Off-line Configuration and On-line Adaptation in Operator Selection

Automating the process of finding good parameter settings is important in the design of high-performing algorithms. These automatic processes can generally be categorized into off-line and on-line methods. Off-line configuration consists in learning and selecting the best setting in a training phase, and usually fixes it while solving an instance. On-line adaptation methods on the contrary vary the parameter setting adaptively during each algorithm run. In this work, we provide an empirical study of both approaches on the operator selection problem, explore the possibility of varying parameter value by a non-adaptive distribution tuned off-line, and incorporate the off-line with on-line approaches. In particular, using an off-line tuned distribution to vary parameter values at runtime appears to be a promising idea for automatic configuration. © 2014 Springer International Publishing.SCOPUS: cp.kinfo:eu-repo/semantics/publishe

GAP test: A cognitive evaluation procedure for shape descriptors

With inspiration from psychophysical researches of the human visual system we propose a novel method for performance evaluation of contour based shape recognition algorithms. We use complete contour representations of objects as a training set. Incomplete contour representations of the same objects are used as a test set and the recognition performance of two shape based methods is investigated. The amount of incompleteness in test cases is quantified using the percentage of contour pixels retained. The performances of the methods are reported using the recognition rate as a function of the degree of incompleteness. We consider three types of incomplete contour representations, viz. segment-wise deletion, occlusion and random pixel depletion. The methods compared in this framework use shape context and distance multiset as local shape descriptors. Qualitatively, both methods mimic human visual perception in the sense that they perform best in the case of random depletion and worst in the case of occluded contours. Quantitatively, the distance multiset method performs better than the shape context method in this test framework

Approximating Pareto Set Topology by Cubic Interpolation on Bi-objective Problems

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